Keasling Lab plants

PUBLICATIONS BY YEAR

20142013201220112010 2009 20082007 2006 2005 2004 20032002 2001more

2014

S. D. Colloms, C. A. Merrick, F. J. Olorunniji, W. M. Stark, M. C. Smith, A. Osbourn, J. D. Keasling, and S. J. Rosser. 2014. “Rapid metabolic pathway assembly and modification using serine integrase site-specific recombination.” Nucl. Acids Res. 42(4).e23. doi:10.1093/nar/gkt1101.

S. Yuzawa, C. H. Eng, L. Katz, and J. D. Keasling. 2014. “Enzyme analysis of the polyketide synthase leads to the discovery of a novel analog of the antibiotic -lipomycin.” J. Antibiotics 67:199-201.

J. Nielsen, M. Fusseneggar, J. Keasling, S. Y. Lee, J. C. Liao, K. Prather, and B. Palsson. 2014. “Engineering synergy in biotechnology.” Nat. Chem. Biol. 10:319-322.

C. J. Paddon and J. D. Keasling. 2014. “Semi-synthetic artemisinin: a model for the use of synthetic biology in pharmaceutical development.” Nat. Rev. Microbiol. 12:355-367.

J. C. Way, J. J. Collins, J. D. Keasling, and P. A. Silver. 2014. “Integrating biological redesign: where synthetic biology came from and where it needs to go.” Cell 157:151-161.

T. L. Ruegg, E. M. Kim, B. A. Simmons, J. D. Keasling, S. W. Singer, T. S. Lee, and M. P. Thelen. 2014. “An auto-inducible mechanism for ionic liquid resistance in microbial biofuel production.” Nat. Commun. 5:3490.

S. Poust, A. Hagan, L. Katz, and J. D. Keasling. 2014. “Narrowing the gap between the promise and the reality of polyketide synthases as a synthetic biology platform.” Curr. Opin. Biotechnol. 30:32-39.

M. Frederix, K. Hutter, J. Leu, T. S. Batth, W. J. Turner, T. L. Ruegg, H. W. Blanch, B. A. Simmons, P. D. Adams, J. D. Keasling, M. P. Thelen, M. J. Dunlop, C. J. Petzold, and A. Mukhopadhyay. 2014. “Development of a native Escherichia coli induction system for ionic liquid tolerance.” PLoS One 9(7):e101115.

J. D. Keasling, J. C. Anderson, A. Arkin, G. Church, K. Costa, L. Katz, T. Kortemme, N. Kuldell, W. Lim, S. Marqusee, K. Oye, M. Palmer, K. J. Prather, P. Silver, C. Voigt, and R. Weiss. 2014. “Synthetic Biology: A global approach.” Nature 510(7504):218.

S. Sarria, B. Wong, H. G. Martin, J. D. Keasling, and P. Peralta-Yahya. “Microbial synthesis of pinine.” ACS Synth. Biol. 3:466-475.

K. W. George, A. Chen, A. Jain. T. S. Batth, E. E. Baidoo, G. Wang, P. D. Adams, C. J. Petzold, J. D. Keasling, and T. S. Lee. 2014. “Correlation analysis of targeted proteins and metabolites to assess and engineering microbial isopentenol production.” Biotechnol. Bioeng. 111(8):1648-1658.

A. Ghosh, J. Nilmeier, D. Weaver, P. D. Adams, J. D. Keasling, A. Mukhopadhyay, C. J. Petzold, H. G. Martin. 2014. “A peptide-based method for 13C metabolic flux analysis in microbial communities.” PLoS Comp Biol 10(9):e1003827. doi:10.1371/journal.pcbi.1003827.

N.C. Kyrpides, P. Hugenholtz, J. A. Eisen, T. Woyke, M. Göker, C. T. Parker, R. Amann, B. J. Beck, P. S. Chain, J. Chun, R. R. Colwell, A. Danchin, P. Dawyndt, T. Dedeurwaerdere, E. F. DeLong, J. C. Detter, P. De Vos, T. J. Donohue, X. Z. Dong, D. S. Ehrlich, C. Fraser, R. Gibbs, J. Gilbert, P. Gilna, F. O. Glöckner, J. K. Jansson, J. D. Keasling, R. Knight, D. Labeda, A. Lapidus, J. S. Lee, W. J. Li, J. Ma, V. Markowitz, E. R. Moore, M. Morrison, F. Meyer, K. E. Nelson, M. Ohkuma, C. A. Ouzounis, N. Pace, J. Parkhill, N. Qin, R. Rossello-Mora, J. Sikorski, D. Smith, M. Sogin, R. Stevens, U. Stingl, K. Suzuki, D. Taylor, J. M. Tiedje, B. Tindall, M. Wagner, G. Weinstock, Weissenbach J, White O, Wang J, L. Zhang, Y. G. Zhou, D. Field, W. B. Whitman, G. M. Garrity, H. P. Klenk. 2014. “Genomic encyclopedia of bacteria and archaea: sequencing a myriad of type strains.” PLoS Biol. 12(8):e1001920. doi: 10.1371/journal.pbio.1001920.

G. Linshiz, N. Stawski, G. Goyal, C. Bi, S. Poust, M. Sharma, V. Mutalik, J. D. Keasling, and N. J. Hillson. 2014. “PR-PR: cross-platform laboratory automation system.” ACS Synth Biol 3(8):515-524.

S. Rodriguez, J. Kirby, C. M. Denby, and J. D. Keasling. 2014. “Production and quantification of sesquiterpenes in Saccharomyces cerevisiae, including extraction, detection and quantification of terpene products and ket related metabolites.” Nat. Protoc. 9(8):1980-96. doi: 10.1038/nprot.2014.132.

L. Rajeev, E. G. Luning, S. Altenburg, G. M. Zane, E. E. Baidoo, M. Catena, J. D. Keasling, J. D. Wall, M. W. Fields, and A. Mukhopadhyay. 2014. “Identification of a cyclic-di-GMP-modulating response regulator that impacts biofilm formation in a model sulfate reducing bacterium. Front Microbiol 5:382. Doi: 10.3389/fmicb.2014.00382.

J. Kirby, M. Nishimoto, R. W. Chow, V. N. Pasumarthi, R. Chan, L. J. Chan, C. J. Petzold, and J. D. Keasling. 2014. “Use of non-ionic surfactants for improvement of terpene production in Saccharomyces cerevisiae.” Appl. Environ. MIcrobiol. 80(21):6685-6693.

T. S. Batth, P. Singh, V. R. Ramakrishnan, M. M. Sousa, L. J. Chan, H. M Tran, E. G. Luning, E. H. Pan, K. M. Vuu, J. D. Keasling, P. D. Adams, and C. J. Petzold. 2014. “A targeted proteomics toolkit for high-throughput absolute quantification of Escherichia coli proteins.” Met. Eng. 26:48-59.

E.-B. Goh, E. E. Baidoo, H. Burd, T. S. Lee, Jay D Keasling, and H. Beller. 2014. “Substantial improvements in methyl ketone production in E. coli and insights on the pathway from in vitro studies.” Met. Eng. 26:67-76.

S. Poust, I. Yoon, P. D. Adams, L. Katz, C. J. Petzold, and J. D. Keasling. 2014. “Understanding the role of histidine in the GHSxG acyltransferase active site motif: evidence for histidine stabilization of the malonyl-enzyme intermediate.” PLoS One 9(10):e109421 doi:10.1371/journal.pone.0109421.

Y. Kung, R. P. McAndrew, X. Xie, C. C. Liu, J. H. Pereira, P. D. Adams, and J. D. Keasling. 2014. “Constructing tailored isoprenoid products by structure-guided modification of geranylgeranyl reductase.” Structure 22(7):1028-1036.

M. Frederix, K. Hütter, J. Leu, T. S. Batth, W. J. Turner, T. L. Rüegg, H. W. Blanch, B. A. Simmons, P. D. Adams, J. D. Keasling, M. P. Thelen, M. J. Dunlop, C. J. Petzold, and A. Mukhopadhyay. 2014. “Development of a native Escherichia coli induction system for ionic liquid tolerance.” PLoS One 9(7):e101115. doi: 10.1371/journal.pone.0101115.

R. W. Haushalter, W. Kim, T. A. Chavkin, L. The, M. E. Garber, M. Nhan, C. J. Petzold, L. Katz, and J. D. Keasling. 2014. “Production of anteiso-branched fatty acids in Escherichia coli; next generation biofuels with improved cold-flow properties.” Metab. Eng. 26:111-118. doi, 10.1016/j.ymben.2014.09.002.

J. L. Foo, H. M. Jensen, R. H. Dahl, K. George, J. D. Keasling, T. S. Lee, S. Leong, A. Mukhopadhyay. 2014. “Improving Microbial Biogasoline Production in Escherichia coli Using Tolerance Engineering.” mBio 5(6):e01932-14. doi: 10.1128/mBio.01932-14.

top

2013

L. E. Bartley, M. L. Peck, S. R. Kim, B. Ebert, C. Maniseri, D. Chiniquy, R. Sykes, L. Gao, C. Rautengarten, M. E. Vega-Sanchez, P. I. Benke, P. E. Canlas, P. Cao, S. Brewer, F. Lin, W. L. Smith, X. Zhang, J. D. Keasling, R. E. Jentoft, S. B. Foster, J. Zhou, A. Ziebell, G. An, H. V. Scheller, and P. D. Ronald. 2013. “Overexpression of a BAHD Acyltransferase, OsAt10, alters rice cell wall hydroxycinnamic acid content and saccharification.” Plant Physiol. 161:1615-1633.

V. K. Mutalik, J. C. Guimaraes, G. Cambray, Q. A. Mai, M. J. Christoffersen, L. Martin, A. Yu, C. Lam, C. Rodriguez, G. Bennett, J. D. Keasling, D. Endy, and A. P. Arkin. 2013. “Quantitative estimation of activity and quality for collections of functional genetic elements.” Nat. Methods 10:347-353.

V. K. Mutalik, J. C. Guimaraes, G. Cambray, C. Lam, M. J. Christoffersen, Q. A. Mai, A. B. Tran, M. Paull, J. D. Keasling, A. P. Arkin, and D. Endy. 2013. “Precise and reliable gene expression via standard transcription and translation initiation elements.” Nat. Methods 10:354-360.

C. J. Paddon, P. J. Westfall, D. J. Pitera, K. Benjamin, K. Fisher, D. McPhee, M. D. Leavell, A. Tai, A. Main, D. Eng, D. R. Polichuk, K. H. Teoh, D. W. Reed, T. Treynor, J. Lenihan, M. Fleck, S. Bajad, G. Dang, D. Diola, G. Dorin, K. W. Ellens, S. Fickes, J. Galazzo, S. P. Gaucher, T. Geistlinger, R. Henry, M. Hepp, T. Horning, T. Iqbal, H. Jiang, L. Kizer, B. Lieu, D. Melis, N. Moss, R. Regentin, S. Secrest, H. Tsuruta, R. Vazquez, L. F. Westblade, L. Xu, M. Yu, Y. Zhang, L. Zhao, J. Lievense, P. S. Covello, J. D. Keasling, K. K. Reiling, N. S. Renninger & J. D. Newman. 2013. “High-level semi-synthetic production of the potent antimalarial artemisinin.” Nature 496:528-532.

D. Groff, A. George, N. Sun, N. Sathitsuksanoh, G. Bokinsky, B. A. Simmons, B. M. Holmes, and J. D. Keasling. 2013. Acid enhanced ionic liquid pretreatment of biomass. Green Chem. 15:1264-1267.

T. de Rond, P. Peralta-Yahya, X. Cheng, T. R. Northen, and J. D. Keasling. 2013. “Versatile synthesis of probes for high throughput enzyme activity screening.” Anal. Bioanal. Chem. 405:4969-4973.

S. Boutigny, A. Saini, E. E. K. Baidoo, N. Yeung, J. D. Keasling, and G. Butland. 2013. “Physical and functional interactions of a monothiol glutaredoxin and an iron sulfur cluster carrier protein with the sulfur-donating radical S-adenosyl-L-methionine enzyme MiaB.” J. Biol. Chem. 288:14200-14211.

G. Bokinsky, E. E.K. Baidoo, S. Akella, H. Burd, D. Weaver, J. Alonso-Gutierrez, H. García-Martín, T. S. Lee, J. D. Keasling. 2013. “HipA-triggered growth arrest and β-lactam tolerance in Escherichia coli is mediated by RelA-dependent ppGpp synthesis.” J. Bacteriol. 195:3173-3182.

S. Yuzawa, C. Eng, L. Katz, and J. D. Keasling. 2013. “Broad substrate specificity of the loading didomain of the lipomycin polyketide synthase.” Biochemistry 52:3791-3793.

G. Linshiz, N. Stawski, S. Poust, C. Bi, J. D. Keasling, and N. J. Hillson. 2013. “PaR-PaR laboratory automation platform.” ACS Synth. Biol. 2:216-222.

J. Alonso-Gutierrez, R. Chan, T. S Batth, P. D Adams, J. D. Keasling, C. J Petzold, and T. S. Lee. 2013. “Metabolic engineering of Escherichia coli for limonene and perillyl alcohol production. Met. Eng. 19:33-41.

A. Eudes, D. Juminaga, E. E. Baidoo, F. W. Collins, J. D. Keasling, and D. Loque. 2013. “Production of hydroxycinnamoyl anthranilates from glucose in Escherichia coli.” Microb. Cell Fact. 12:62

H. H. Chou and J. D. Keasling. 2013. “Programming adaptive control to evolve increased metabolite production.” Nat. Commun. 4:2595. DOI: 10:1038/ncomms3595.

A. Zhou, E. Baidoo, Z. He, A. Mukhopadhyay, J. K. Baumohl, P. Benke, M. P Joachimiak, M. Xie, R. Song, A. P. Arkin, T. C. Hazen, J. D. Keasling, J. D. Wall, D. A. Stahl and J. Zhou. 2013. “Characterization of NaCl tolerance in Desulfovibrio vulgaris Hildenborough through experimental evolution.” ISME J. 7(9):1790-1802.

S. Gille, V. Sharma, E. E. Baidoo, J. D. Keasling, H. V. Scheller, and M. Pauly. 2013. “Arabinosylation of a Yariv precipitable cell wall polymer impacts plant growth as exemplified by the Arabidopsis glycosyltransferase mutant ray1.” Mol. Plant 6(4):1369-1372.

R. H. Dahl, F. Zhang, J. Alonso-Gutierrez, E. Baidoo, T. S. Batth, A. M. Redding-Johanson, C. J. Petzold, A. Mukhopadhyay, T. Soon Lee, P. D. Adams, and J. D. Keasling. 2013. “Engineering dynamic pathway regulation using stress-response promoters.” Nat. Biotechnol. 31(11):1039-1046. doi: 10.1038/nbt.2689.

J. D. Keasling and J. C. Venter. 2013. “Applications of synthetic biology to enhance life.” The Bridge 43:47-58.

C. J. Joshua, L. D. Perez, and J. D. Keasling. 2013. “Functional Characterization of the Origin of Replication of pRN1 from Sulfolobus islandicus REN1H1.” PLoS ONE 8(12):e84664. doi:10.1371/journal.pone.0084664

H. L Szmidt-Middleton, M. Ouellet, P. D Adams, J. D Keasling, and A. Mukhopadhyay. 2013. “Utilizing a highly responsive gene, yhjX, in E. coli based production of 1,4-butanediol.” Chem. Eng. Sci. 103:68-73.

H. M. Woo, G. W. Murray, T. S. Batth, N. Prasad, P. D. Adams, J. D. Keasling, C. J. Petzold, and T. S. Lee. 2013. “Application of targeted proteomics and biological parts assembly in E. coli to optimize the biosynthesis of an anti-malarial drug precursor, amorpha-4,11-diene.” Chem. Eng. Sci. 103:21-28.

J. Ito, T. Herter, E. E. Baidoo, J. Lao, M. E. Vega-Sanchez, A. M. Smith-Moritz, P. D. Adams, J. D. Keasling, B. Usadel, C. J. Petzold, and J. L. Heazlewood. 2014. “Analysis of plant nucleotide sugars by hydrophilic interaction liquid chromatography and tandem mass spectrometry.” Anal. Biochem. 448C:14-22. doi: 10.1016/j.ab.2013.11.026.

P. Javidpour, J. H. Pereira, E. B. Goh, R. P. McAndrew, S. M. Ma, G. D. Friedland, J. D. Keasling, S. R. Chhabra, P. D. Adams, and H. R. Beller. 2014. “Biochemical and structural studies of NADH-dependent FabG used to increase the bacterial production of fatty acids under anaerobic conditions.” Appl. Environ. Microbiol. 80(2):497-505. doi: 10.1128/AEM.03194-13.

W. Runguphan and J. D. Keasling. 2014. “Metabolic engineering of Saccharomyces cerevisiae for production of fatty acid-derived biofuels and chemicals. Met. Eng. 21:103-113.

D. E. Garcia and J. D. Keasling. 2014. “Kinetics of phosphomevalonate kinase from Saccharomyces cerevisiae.” PLoS One 9(1):e87112. Doi: 10.1371/journal.pone.0087112.

F. F. Nowroozi, E. E. Baidoo, S. Ermakov, A. M. Redding-Johanson, T. S. Batth, C. J. Petzold, and J. D. Keasling. 2013. “Metabolic pathway optimization using ribosome binding site variants and combinatorial gene assembly.” Appl. Microbiol. Biotechnol. 98:1567-1581.

top

2012

E. B. Goh, E. E. Baidoo, J. D. Keasling, and H. R. Beller.  2012.  “Engineering of bacterial methyl ketone synthesis for biofuels.”  Appl. Environ. Microbiol. 78:70-80.

D. Juminaga, E. E. Baidoo, A. M. Redding-Johanson, T. S. Batth, H. Burd, A. Mukhopadhyay, C. J. Petzold, and J. D. Keasling.  2012.  “Modular engineering of L-tyrosine production in Escherichia coli.”  Appl. Environ. Microbiol. 78:89-98.

D. Groff, P. I. Benke, T. S. Batth, G. Bokinsky, C. J. Petzold, P. D. Adams, and J. D. Keasling.  2012.  “Supplementation of intracellular XylR leads to coutilization of hemicellulose sugars.”  Appl. Environ. Microbiol. 78:2221-2229.

Y. Satoh, K. Tajima, M. Munekata, J. D. Keasling, and T. S. Lee.  2012.  “Engineering of a tyrosol-producing pathway, utilizing simple sugar and the central metabolite tyrosine, in Escherichia coli.”  J. Agric. Food Chem. 60:979-984.

P. J. Westfall, D. J. Pitera, J. R. Lenihan, D. Eng, F. Woolard, R. Regentin, T. Horning, Hiroko Tsuruta, D. Melis, A. Owens, S. Fickes, D. Diola, J. D. Keasling, M. D. Leavell, D. McPhee, N. S. Renninger, J. D. Newman, C. J. Paddon.  2012.  “Production of Amorpha-4,11-diene in yeast, and its conversion to dihydroartemisinic acid, precursor to the antimalarial agent artemisinin.”  Proc. Natl. Acad. Sci. USA 109:E111-E118.

Z. Li, J. D. Keasling, and K. Niyogi. 2012. “Overlapping photoprotective function of vitamin E and carotenoids in Chlamydomonas.” Plant Phys. 158:313-323.

S. Kumar, F. M. Hahn, E. Baidoo, T. S. Kahlon, D. F. Wood, C. M. McMahan, K. Cornish, J. D. Keasling, H. Daniell, and M. C. Whalen.  2012.  “Remodeling the isoprenoid pathway in tobacco by expressing the cytoplasmic mevalonate pathway in chloroplasts.”  Met. Eng. 14:19-28.

C. Rautengarten, B. Ebert, M. Ouellet, M. Nafisi, E. E.K. Baidoo, P. Benke, M. Stranne, A. Mukhopadhyay, J. D. Keasling, Y. Sakuragi, and H. V. Scheller.  2012.  “The Arabidopsis deficient in cutin ferulate (DCF) encodes a transferase required for feruloylation of ω-hydroxy fatty acids in cutin polyester.” Plant Phys. 158:654-665.

K. Deng, K. W. George, W. Reindl, J. D. Keasling, P. D. Adams, T. S. Lee, A. K. Singh, and T. R. Northen.  2012.  “Encoding substrates with mass tags to resolve stereospecific reactions using Nimzyme.” Rapid Commun. Mass Spectrom. 26:611-615.

J. Chen, D. Densmore, T. S. Ham, J. D. Keasling, and N. J. Hillson.  2012.  “DeviceEditor visual biological CAD canvas.”  J. Biol. Eng. 6:1. 

J. D. Keasling.  2012.  “Synthetic biology and the development of tools for metabolic engineering.”  Met. Eng. 14:189-195.

F. Zhang, J. M. Carothers, and J. D. Keasling.  2012.  “Design of a dynamic sensor-regulator system for production of chemicals and fuels derived from fatty acids.”  Nat. Biotechnol. 30:354-359.

A. Eudes, A. George, P. Mukerjee, J. S. Kim, B. Pollet, P. I. Benke, F. Yang, P. Mitra, L. Sun, O. P. Cetinkol, S. Chabout, G. Mouille, L. Soubigou-Taconnat, S. Balzergue, S. Singh, B. M. Holmes, A. Mukhopadhyay, J. D. Keasling, B. A. Simmons, C. Lapierre, J. Ralph, D. Loqué.  2012.  “Biosynthesis and incorporation of side-chain-truncated lignin monomers to reduce lignin polymerization and enhance saccharification.”  Plant Biotechnol J.  10:609-620.

X. Xie, J. Kirby, and J. D. Keasling.  2012.  “Functional characterization of four sesquiterpene synthases from Ricinus communis (Caster Bean).”  Phytochemistry 78:20-28.

P. Singh, T. S. Batth, D. Juminaga, R. H. Dahl, J. D. Keasling, P. D. Adams, and C. J. Petzold.  2012.  “Application of targeted proteomics to metabolically engineered Escherichia coli.”  Proteomics 12:1289-1299.

J. L. Park, E. J. Steen, H. Burd, S. S. Evans, A. M. Redding-Johanson, T. Batth, P. I. Benke, P. D’haeseleer, N. Sun, K. L. Sale, J. D. Keasling, C. J. Petzold, A. Mukhopadhyay, S. W. Singer, B. A. Simmons, and J. M. Gladden.  2012.  “A thermophilic ionic liquid-tolerant cocktail for the production of cellulosic biofuels.”  PLoS One 7:e37010. 

Z. Chen, G. D. Friedland, J. H. Pereira, S. A. Reveco, R. Chan, J. I. Park, M. P. Thelen, P. D. Adams, A. P. Arkin, J. D. Keasling, H. W. Blanch, B. A. Simmons, D. Chivian, and S. R. Chhabra.  2012.  “Tracing determinants of dual-substrate specificity in glycoside hydrolase family 5.”  J. Biol. Chem. 287:25335-25343.

Y. Xiao, T. Savchenko, E. E. Baidoo, W. E. Chehab, D. M. Hayden, V. Tolstikov, J. A. Corwin, D. J. Kliebenstein, J. D. Keasling, and K. Dehesh.  2012.  “Retrograde signaling by the plastidial metabolite MEcPP regulates expression of nuclear stress-response genes.”  Cell 149:1525-1535.

M. E. Clark, Z. He, A. M. Redding, M. P. Joachimiak, J. D. Keasling, J. Zhou, A. P. Arkin, A. Mukhopadhyay, and M. W. Fields.  2012.  “Transcriptomic and proteomic analyses of Desulfovibrio vulgaris biofilms: carbon and energy flow contribute to the distinct biofilm growth state.”  BMC Genomics 13:138.

P. P. Peralta-Yahya, F. Zhang, S. B. del Cardayre, and J. D. Keasling.  2012.  “Microbial engineering for the production of advanced biofuels.”  Nature 488:320-328.

J. Perez-Gil, E. M. Uros, S. Sauret-Gueto, L. M. Lois, J. Kirby, M. Nishimoto, E. E. K. Baidoo, J. D. Keasling, A. Boronat, and M. Rodriguez-Concepcion.  2012.  “Mutations in Escherichia coli aceE and rib genes allow survival of strains defective in the first step of the isoprenoid biosynthesis pathway.” PLoS One 7(8):e43775. 

E. A. Rennie, S. F. Hansen, E. Baidoo, M. Hadi, J. D. Keasling, H. Scheller.  2012.  “Three members of the Arabidopsis glycosyltransferase family 8 are xylan glucuronosyltransferases.” Plant Physiol. 159:1408-1417.  

N. J. Hillson, R. D. Rosengarten, and J. D. Keasling.  2012.  “j5 DNA assembly design automation software.”  ACS Syn. Biol. 1:14-21.

J. H. Pereira, E.-B. Goh, J. D. Keasling, H. R. Beller, and P. D. Adams.  2012.  “Structure of FabH and factors affecting the distribution of branched fatty acids in Micrococcus luteus.”  Acta Crystallographica D. 68:1320-1328.

S. Yuzawa, W. Kim, L. Katz, and J. D. Keasling.  2012. “Heterologous production of polyketides by modular type I polyketide synthases in Escherichia coli.Curr. Opin. Biotechnol. 23:725-735.

C. B. Walker, A. M. Redding-Johanson, E. Baidoo, L. Rajeev, Z. He, E. L Hendrickson, M.P. Joachimiak, S. Stolyar, A. P. Arkin, J. A. Leigh, J. Zhou, J. D. Keasling, A. Mukhopadhyay, and D. A. Stahl.  2012.  “Functional response of methanogenic archaea to syntrophic growth.”  ISME J. 6:2045-2055.

H. H. Chou and J. D. Keasling.  2012.  “Five-carbon alcohols are produced from isopentenyl diphosphate using a synthetic pathway.”  Appl. Environ. Microbiol. 78:7829-7855.

D. Chiniquy, V. Sharma, A. Schultink, E. E. Baidoo, C. Rautengarten, K. Cheng, A. Carroll, P. Ulvskov, J. Harholt, J. D. Keasling, M. Pauly, H. V. Scheller, and P. C. Ronald.  2012.  “XAX1 from glycosyltransferase family 61 mediates xylosyltransfer to rice xylan.”  Proc. Natl. Acad. Sci. USA 109:17117-17122.

T. S. Ham, Z. Dmytriv, H. Plahar, J. Chen, N. J. Hillson, and J. D. Keasling.  2012.  “Design, implementation and practice of JBEI-ICE: an open source biological part registry platform and tools.”  Nucl. Acids Res. 40:e141 (doi: 10.1093/nar/gks531).

F. Zhang, M. Ouellet, T. Batth, P. D. Adams, C. J. Petzold, A. Mukhopadhyay, and J. D. Keasling.  2012.  “Enhancing fatty acid production by the expression of the regulatory transcription factor FadR.”  Met. Eng. 14:653-660.

A. E. Mckee, B. J. Rutherford, D. C. Chivian, E. K. Baidoo, D. Juminaga, D. Kuo, P. I. Benke, J. A. Dietrich, S. M. Ma, A. P. Arkin, C. J. Petzold, P. D. Adams, J. D. Keasling and S. R. Chhabra.  2012.  “Manipulation of the carbon storage regulator system for metabolite remodeling and biofuel production in Escherichia coli.”  Microb. Cell Fact. 11:79 (doi:10.1186/1475-2859-11-79). 

J. D. Keasling, A. Mendoza, and P. S. Baran. 2012. “Synthesis: A constructive debate.”  Nature 492:188-189. 

Y. Satoh, K. Tajima, M. Munekata, J. D. Keasling, and T. S. Lee.  2012.  “Engineering of L-tyrosine oxidation in Escherichia coli and microbial production of hydroxytyrosol.”  Met. Eng. 14:603-610.

J. D. Keasling. 2012. “Engineering biology for drugs and fuels.” Proc. Amer. Philosoph. Soc. 156:283-294. 

Y. Kung, W. Runguphan, and J. D. Keasling. 2012. “From fields to fuels: recent advances in the microbial production of biofuels.”  ACS Synth. Biol. 1:498-513.

S. Yuzawa, N. Chiba, L. Katz, and J. D. Keasling. 2012. “Construction of a part of a 3-hydroxypropionate cycle for heterologous polyketide biosynthesis in Escherichia coli.” Biochemistry 51:9779-9781.

S. M. Paap, T. H. West, D. K. Manley, E. J. Steen, H. R. Beller, J. D. Keasling, D. C. Dibble, S. Chana, and B. A. Simmons.  2013.  “Biochemical production of ethanol and fatty acid ethyl esters from switchgrass: A comparative analysis of environmental and economic performance.”  Biomass Bioenergy 49:49-62.

B. Ozaydin, H. Burd, T. S. Lee, and J. D. Keasling.  2013.  “Carotenoid-based phenotypic screen of the yeast deletion collection reveals new genes with roles in isoprenoid production.”  Met. Eng15:174-183.

J. A. Dietrich, D. L. Shis, A. Alikhani, and J. D. Keasling.  2013.  “Transcription factor-based screens and synthetic selections for microbial small-molecule biosynthesis.”  ACS Synth. Biol. 2:47-58. 

S. Yuzawa, N. Chiba, L. Katz, and J. D. Keasling.  2012.  “Construction of a part of a 3-hydroxypropionate cycle for heterologous polyketide biosynthesis in Escherichia coli.” Biochemistry in press.

top

2011

2010

top

2009

top

2008

top

2007

top

2006

top

2005

top

2004

top

2003

top

2002

top

2001

top

2000

top

1999

top

1998

top

1997

top

1996

top

1995

top

1994

top

1993

top

1992

top

1991

top

1990

top

1989

top
book end